Uses of Class
edu.unc.csbio.data.Feature

Packages that use Feature
edu.unc.csbio.data   
edu.unc.csbio.RNASim   
edu.unc.csbio.util   
 

Uses of Feature in edu.unc.csbio.data
 

Subclasses of Feature in edu.unc.csbio.data
 class Deletion
          The class for deletion variant.
 class Exon
          The class Exon inherits abstract class Feature.
 class Gene
          The class Gene inherits abstract class Feature and contains information of gene.
 class Insertion
          The class for insertion variant.
 class Transcript
          The class Transcript inherits abstract class Feature and contains information of transcript.
 

Fields in edu.unc.csbio.data with type parameters of type Feature
private  java.util.ArrayList<Feature> ExtendedSequenceBuffer.sv
          An ArrayList of Feature representing structure variants in the sequence
 

Methods in edu.unc.csbio.data with parameters of type Feature
 int Feature.compareTo(Feature f)
          A necessary method for the Comparable interface.
 

Constructor parameters in edu.unc.csbio.data with type arguments of type Feature
ExtendedSequenceBuffer(java.lang.String _raw, int _offset, java.util.ArrayList<Feature> _sv)
          A constructor for object ExtendedSequenceBuffer
 

Uses of Feature in edu.unc.csbio.RNASim
 

Fields in edu.unc.csbio.RNASim with type parameters of type Feature
(package private) static java.util.HashMap<java.lang.String,java.util.ArrayList<Feature>> MainCmdline.svPool
          an array that stores the structure variants
 

Uses of Feature in edu.unc.csbio.util
 

Methods in edu.unc.csbio.util that return Feature
 Feature VCFReader.readNext()
          Read the VCF file and return the next insertion/deletion object.