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java.lang.Objectedu.unc.csbio.RNASim.ReadGenerator
public class ReadGenerator
The class generates pair-end reads from a sequence.
Field Summary | |
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private int |
fragMaxLength
maximum sequence length |
private int |
fragMinLength
minimum sequence length |
private int |
readLength
read length |
Constructor Summary | |
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ReadGenerator(int _readLength,
int _fragMinLength,
int _fragMaxLength)
A constructor for ReadGenerator object |
Method Summary | |
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Read[] |
generate(java.lang.String sequence)
Randomly sample a fragment from a transcript sequence, and then return its both ends. |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
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private final int readLength
private final int fragMinLength
private final int fragMaxLength
Constructor Detail |
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public ReadGenerator(int _readLength, int _fragMinLength, int _fragMaxLength)
ReadGenerator
object
_readLength
- read length_fragMinLength
- minimum sequence length_fragMaxLength
- maximum sequence lengthMethod Detail |
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public Read[] generate(java.lang.String sequence)
sequence
- the transcript sequence.
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