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FaReader
- Class in
edu.unc.csbio.util
this class is for reading data from a fasta file with provided starting and end position
FaReader()
- Constructor for class edu.unc.csbio.util.
FaReader
Feature
- Class in
edu.unc.csbio.data
The abstract class for all annotation features.
Feature()
- Constructor for class edu.unc.csbio.data.
Feature
filename
- Static variable in class edu.unc.csbio.RNASim.
Config
findFirstOverlappedSV(int, int)
- Method in class edu.unc.csbio.data.
ExtendedSequenceBuffer
Find the SV that has the position just before the given region
fis
- Static variable in class edu.unc.csbio.util.
BigFaReader
obtains input bytes from given
fasta
in a file system
fq1
- Variable in class edu.unc.csbio.RNASim.
RealQualityGenerator
location of two fq files
fq2
- Variable in class edu.unc.csbio.RNASim.
RealQualityGenerator
location of two fq files
FqWriter
- Class in
edu.unc.csbio.util
The class to output a fq file
FqWriter(String, int)
- Constructor for class edu.unc.csbio.util.
FqWriter
constructor for object
FqWriter
fragMaxLength
- Static variable in class edu.unc.csbio.RNASim.
MainCmdline
maximum sequence length
fragMaxLength
- Variable in class edu.unc.csbio.RNASim.
ReadGenerator
maximum sequence length
fragMinLength
- Static variable in class edu.unc.csbio.RNASim.
MainCmdline
minimum sequence length
fragMinLength
- Variable in class edu.unc.csbio.RNASim.
ReadGenerator
minimum sequence length
FS
- Static variable in class edu.unc.csbio.util.
VCFReader
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