Uses of Class
edu.unc.csbio.data.Read

Packages that use Read
edu.unc.csbio.RNASim   
 

Uses of Read in edu.unc.csbio.RNASim
 

Methods in edu.unc.csbio.RNASim that return Read
 Read[] ReadGenerator.generate(java.lang.String sequence)
          Randomly sample a fragment from a transcript sequence, and then return its both ends.
 

Methods in edu.unc.csbio.RNASim with parameters of type Read
 java.lang.String[] RealQualityGenerator.generate(Read[] r)
          Generate read quality score by sampling real Fastq file.
abstract  java.lang.String[] QualityGenerator.generate(Read[] r)
          An abstract method of generate(Read[] r)
 java.lang.String[] PerfectQualityGenerator.generate(Read[] r)
          given a read, this method generates perfect quality score for every position of the read
static int ReadModifier.modify(Read[] r, java.lang.String[] qs)
          a method to change read sequence based on given quality score For each char, qs[i], in the array, Qphred = qs[i] - 64.