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O

offset - Variable in class edu.unc.csbio.data.Read
The offset of a read in a segment sequence coordinate
offset - Variable in class edu.unc.csbio.data.SequenceBuffer
The the position difference between the start position of sequence and the start position of the reference gene, of the object SequenceBuffer
out - Variable in class edu.unc.csbio.util.FqWriter
an output BufferedWriter
out1 - Static variable in class edu.unc.csbio.RNASim.MainCmdline
the file location of fq writer file (for first pair end read)
out2 - Static variable in class edu.unc.csbio.RNASim.MainCmdline
the file location of fq writer file (for second pair end read)
outputBufferSize - Static variable in class edu.unc.csbio.RNASim.MainCmdline
output buffer size

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