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id - Variable in class edu.unc.csbio.data.Gene
The name, id and biotype of the gene.
id - Variable in class edu.unc.csbio.data.Transcript
The name and id of the transcript.
IDPREFIX - Static variable in class edu.unc.csbio.RNASim.MainCmdline
this will be the prefix of the all read ID
indexFile - Variable in class edu.unc.csbio.util.BigFaReader
name of index file
indexMap - Static variable in class edu.unc.csbio.util.BigFaReader
this maps a chromosome name to its starting offset and line length
inputBufferSize - Static variable in class edu.unc.csbio.RNASim.MainCmdline
input buffer size
insertedSequence - Variable in class edu.unc.csbio.data.Insertion
An char array of sequences to be inserted
Insertion - Class in edu.unc.csbio.data
The class for insertion variant.
Insertion(String, int, String) - Constructor for class edu.unc.csbio.data.Insertion
A constructor for Insertion object The end position is smaller than start position.
isQualityScoreFound - Variable in class edu.unc.csbio.RNASim.RealQualityGenerator
to check whether quality score is found

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