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A

abort(Exception) - Static method in class edu.unc.csbio.RNASim.MainCmdline
the method to abort the program
abundancePool - Static variable in class edu.unc.csbio.RNASim.MainCmdline
a Hashmap that maps a string to an abundance value
addExon(Exon) - Method in class edu.unc.csbio.data.Transcript
The method to add a new exon
addTranscript(Transcript) - Method in class edu.unc.csbio.data.Gene
The method to add a new transcript
altFS - Static variable in class edu.unc.csbio.util.VCFReader
 
altOffset - Static variable in class edu.unc.csbio.util.VCFReader
 
annotLimit - Static variable in class edu.unc.csbio.RNASim.MainCmdline
max number of lines allowed for annotation file
assignmentDelimiter - Static variable in class edu.unc.csbio.util.GTFParser
three delimiters
attributeDelimiter - Static variable in class edu.unc.csbio.util.GTFParser
three delimiters

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