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tDistDOF
- Static variable in class edu.unc.csbio.RNASim.
MainCmdline
the value used to calculate distMean.
toString()
- Method in class edu.unc.csbio.data.
Deletion
A stub method for toString()
toString()
- Method in class edu.unc.csbio.data.
Exon
A method to get exon information
toString()
- Method in class edu.unc.csbio.data.
Feature
An abstract method of
toString()
toString()
- Method in class edu.unc.csbio.data.
Gene
A method to get gene information
toString()
- Method in class edu.unc.csbio.data.
Insertion
A stub method for toString()
toString()
- Method in class edu.unc.csbio.data.
Read
A method to get read sequence
toString()
- Method in class edu.unc.csbio.data.
Transcript
A method to get transcript information
totalGenes
- Static variable in class edu.unc.csbio.RNASim.
MainCmdline
total number of the genes
totalGenesByChrom
- Static variable in class edu.unc.csbio.RNASim.
MainCmdline
total number of genes in a chromosome
totalReads
- Static variable in class edu.unc.csbio.RNASim.
MainCmdline
total number of the reads
totalReadsByChrom
- Static variable in class edu.unc.csbio.RNASim.
MainCmdline
total number of reads in a chromosome
totalTranscripts
- Static variable in class edu.unc.csbio.RNASim.
MainCmdline
total number of transcripts
totalTranscriptsByChrom
- Static variable in class edu.unc.csbio.RNASim.
MainCmdline
total number of transcripts in a chromosome
Transcript
- Class in
edu.unc.csbio.data
The class
Transcript
inherits abstract class
Feature
and contains information of transcript.
Transcript(String, String, Exon)
- Constructor for class edu.unc.csbio.data.
Transcript
A constructor for
Transcript
object
transcriptPool
- Static variable in class edu.unc.csbio.RNASim.
MainCmdline
a TreeMap that maps a string to a transcript
transcripts
- Variable in class edu.unc.csbio.data.
Gene
An ArrayList of transcripts in the gene
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