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offset
- Variable in class edu.unc.csbio.data.
Read
The offset of a read in a segment sequence coordinate
offset
- Variable in class edu.unc.csbio.data.
SequenceBuffer
The the position difference between the start position of sequence and the start position of the reference gene, of the object
SequenceBuffer
out
- Variable in class edu.unc.csbio.util.
FqWriter
an output BufferedWriter
out1
- Static variable in class edu.unc.csbio.RNASim.
MainCmdline
the file location of fq writer file (for first pair end read)
out2
- Static variable in class edu.unc.csbio.RNASim.
MainCmdline
the file location of fq writer file (for second pair end read)
outputBufferSize
- Static variable in class edu.unc.csbio.RNASim.
MainCmdline
output buffer size
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