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id
- Variable in class edu.unc.csbio.data.
Gene
The name, id and biotype of the gene.
id
- Variable in class edu.unc.csbio.data.
Transcript
The name and id of the transcript.
IDPREFIX
- Static variable in class edu.unc.csbio.RNASim.
MainCmdline
this will be the prefix of the all read ID
indexFile
- Variable in class edu.unc.csbio.util.
BigFaReader
name of index file
indexMap
- Static variable in class edu.unc.csbio.util.
BigFaReader
this maps a chromosome name to its starting offset and line length
inputBufferSize
- Static variable in class edu.unc.csbio.RNASim.
MainCmdline
input buffer size
insertedSequence
- Variable in class edu.unc.csbio.data.
Insertion
An char array of sequences to be inserted
Insertion
- Class in
edu.unc.csbio.data
The class for insertion variant.
Insertion(String, int, String)
- Constructor for class edu.unc.csbio.data.
Insertion
A constructor for
Insertion
object The end position is smaller than start position.
isQualityScoreFound
- Variable in class edu.unc.csbio.RNASim.
RealQualityGenerator
to check whether quality score is found
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