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Packages that use Feature | |
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edu.unc.csbio.data | |
edu.unc.csbio.RNASim | |
edu.unc.csbio.util |
Uses of Feature in edu.unc.csbio.data |
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Subclasses of Feature in edu.unc.csbio.data | |
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class |
Deletion
The class for deletion variant. |
class |
Exon
The class Exon inherits abstract class Feature . |
class |
Gene
The class Gene inherits abstract class Feature and
contains information of gene. |
class |
Insertion
The class for insertion variant. |
class |
Transcript
The class Transcript inherits abstract class
Feature and contains information of transcript. |
Fields in edu.unc.csbio.data with type parameters of type Feature | |
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private java.util.ArrayList<Feature> |
ExtendedSequenceBuffer.sv
An ArrayList of Feature representing structure variants in
the sequence |
Methods in edu.unc.csbio.data with parameters of type Feature | |
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int |
Feature.compareTo(Feature f)
A necessary method for the Comparable interface. |
Constructor parameters in edu.unc.csbio.data with type arguments of type Feature | |
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ExtendedSequenceBuffer(java.lang.String _raw,
int _offset,
java.util.ArrayList<Feature> _sv)
A constructor for object ExtendedSequenceBuffer |
Uses of Feature in edu.unc.csbio.RNASim |
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Fields in edu.unc.csbio.RNASim with type parameters of type Feature | |
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(package private) static java.util.HashMap<java.lang.String,java.util.ArrayList<Feature>> |
MainCmdline.svPool
an array that stores the structure variants |
Uses of Feature in edu.unc.csbio.util |
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Methods in edu.unc.csbio.util that return Feature | |
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Feature |
VCFReader.readNext()
Read the VCF file and return the next insertion/deletion object. |
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