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B

basicDelimiter - Static variable in class edu.unc.csbio.util.GTFParser
three delimiters
basicKeyArray - Static variable in class edu.unc.csbio.util.GTFParser
right basic fields as a String array
BigFaReader - Class in edu.unc.csbio.util
this class is for reading data from a fasta file, and reading/generating an index file
BigFaReader(String) - Constructor for class edu.unc.csbio.util.BigFaReader
This is the constructor of object BigFaReader.
biotype - Variable in class edu.unc.csbio.data.Gene
The name, id and biotype of the gene.
br - Static variable in class edu.unc.csbio.util.VCFReader
 
br1 - Variable in class edu.unc.csbio.RNASim.RealQualityGenerator
two BufferedReader to read two fq files
br2 - Variable in class edu.unc.csbio.RNASim.RealQualityGenerator
two BufferedReader to read two fq files
BuildAbundance(String) - Static method in class edu.unc.csbio.RNASim.MainCmdline
this method creates abundance file with default settings
buildIndex(String) - Static method in class edu.unc.csbio.util.BigFaReader
This method will generate an index file from dataFile.

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