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F

FaReader - Class in edu.unc.csbio.util
this class is for reading data from a fasta file with provided starting and end position
FaReader() - Constructor for class edu.unc.csbio.util.FaReader
 
Feature - Class in edu.unc.csbio.data
The abstract class for all annotation features.
Feature() - Constructor for class edu.unc.csbio.data.Feature
 
filename - Static variable in class edu.unc.csbio.RNASim.Config
 
findFirstOverlappedSV(int, int) - Method in class edu.unc.csbio.data.ExtendedSequenceBuffer
Find the SV that has the position just before the given region
fis - Static variable in class edu.unc.csbio.util.BigFaReader
obtains input bytes from given fasta in a file system
fq1 - Variable in class edu.unc.csbio.RNASim.RealQualityGenerator
location of two fq files
fq2 - Variable in class edu.unc.csbio.RNASim.RealQualityGenerator
location of two fq files
FqWriter - Class in edu.unc.csbio.util
The class to output a fq file
FqWriter(String, int) - Constructor for class edu.unc.csbio.util.FqWriter
constructor for object FqWriter
fragMaxLength - Static variable in class edu.unc.csbio.RNASim.MainCmdline
maximum sequence length
fragMaxLength - Variable in class edu.unc.csbio.RNASim.ReadGenerator
maximum sequence length
fragMinLength - Static variable in class edu.unc.csbio.RNASim.MainCmdline
minimum sequence length
fragMinLength - Variable in class edu.unc.csbio.RNASim.ReadGenerator
minimum sequence length
FS - Static variable in class edu.unc.csbio.util.VCFReader
 

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