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abort(Exception)
- Static method in class edu.unc.csbio.RNASim.
MainCmdline
the method to abort the program
abundancePool
- Static variable in class edu.unc.csbio.RNASim.
MainCmdline
a Hashmap that maps a string to an abundance value
addExon(Exon)
- Method in class edu.unc.csbio.data.
Transcript
The method to add a new exon
addTranscript(Transcript)
- Method in class edu.unc.csbio.data.
Gene
The method to add a new transcript
altFS
- Static variable in class edu.unc.csbio.util.
VCFReader
altOffset
- Static variable in class edu.unc.csbio.util.
VCFReader
annotLimit
- Static variable in class edu.unc.csbio.RNASim.
MainCmdline
max number of lines allowed for annotation file
assignmentDelimiter
- Static variable in class edu.unc.csbio.util.
GTFParser
three delimiters
attributeDelimiter
- Static variable in class edu.unc.csbio.util.
GTFParser
three delimiters
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