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Packages that use Read | |
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edu.unc.csbio.RNASim |
Uses of Read in edu.unc.csbio.RNASim |
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Methods in edu.unc.csbio.RNASim that return Read | |
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Read[] |
ReadGenerator.generate(java.lang.String sequence)
Randomly sample a fragment from a transcript sequence, and then return its both ends. |
Methods in edu.unc.csbio.RNASim with parameters of type Read | |
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java.lang.String[] |
RealQualityGenerator.generate(Read[] r)
Generate read quality score by sampling real Fastq file. |
abstract java.lang.String[] |
QualityGenerator.generate(Read[] r)
An abstract method of generate(Read[] r) |
java.lang.String[] |
PerfectQualityGenerator.generate(Read[] r)
given a read, this method generates perfect quality score for every position of the read |
static int |
ReadModifier.modify(Read[] r,
java.lang.String[] qs)
a method to change read sequence based on given quality score For each char, qs[i], in the array, Qphred = qs[i] - 64. |
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