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basicDelimiter
- Static variable in class edu.unc.csbio.util.
GTFParser
three delimiters
basicKeyArray
- Static variable in class edu.unc.csbio.util.
GTFParser
right basic fields as a String array
BigFaReader
- Class in
edu.unc.csbio.util
this class is for reading data from a fasta file, and reading/generating an index file
BigFaReader(String)
- Constructor for class edu.unc.csbio.util.
BigFaReader
This is the constructor of object
BigFaReader
.
biotype
- Variable in class edu.unc.csbio.data.
Gene
The name, id and biotype of the gene.
br
- Static variable in class edu.unc.csbio.util.
VCFReader
br1
- Variable in class edu.unc.csbio.RNASim.
RealQualityGenerator
two BufferedReader to read two fq files
br2
- Variable in class edu.unc.csbio.RNASim.
RealQualityGenerator
two BufferedReader to read two fq files
BuildAbundance(String)
- Static method in class edu.unc.csbio.RNASim.
MainCmdline
this method creates abundance file with default settings
buildIndex(String)
- Static method in class edu.unc.csbio.util.
BigFaReader
This method will generate an index file from
dataFile
.
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