Package edu.unc.csbio.RNASim

Class Summary
Config The class Config is for reading and processing configuration file.
MainCmdline The class MainCmdline is the main class
PerfectQualityGenerator The class PerfectQualityGenerator extending QualityGenerator is for generating perfect quality score.
QualityGenerator The abstract class for all the quality score generator classes.
QualityGeneratorFactory The factory that creates different quality score generator objects based on configuration.
ReadGenerator The class generates pair-end reads from a sequence.
ReadModifier The class modifies pair-end reads from a sequence.
RealQualityGenerator The class RealQualityGenerator extending QualityGenerator is for generating quality score from real fq files.