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T

tDistDOF - Static variable in class edu.unc.csbio.RNASim.MainCmdline
the value used to calculate distMean.
toString() - Method in class edu.unc.csbio.data.Deletion
A stub method for toString()
toString() - Method in class edu.unc.csbio.data.Exon
A method to get exon information
toString() - Method in class edu.unc.csbio.data.Feature
An abstract method of toString()
toString() - Method in class edu.unc.csbio.data.Gene
A method to get gene information
toString() - Method in class edu.unc.csbio.data.Insertion
A stub method for toString()
toString() - Method in class edu.unc.csbio.data.Read
A method to get read sequence
toString() - Method in class edu.unc.csbio.data.Transcript
A method to get transcript information
totalGenes - Static variable in class edu.unc.csbio.RNASim.MainCmdline
total number of the genes
totalGenesByChrom - Static variable in class edu.unc.csbio.RNASim.MainCmdline
total number of genes in a chromosome
totalReads - Static variable in class edu.unc.csbio.RNASim.MainCmdline
total number of the reads
totalReadsByChrom - Static variable in class edu.unc.csbio.RNASim.MainCmdline
total number of reads in a chromosome
totalTranscripts - Static variable in class edu.unc.csbio.RNASim.MainCmdline
total number of transcripts
totalTranscriptsByChrom - Static variable in class edu.unc.csbio.RNASim.MainCmdline
total number of transcripts in a chromosome
Transcript - Class in edu.unc.csbio.data
The class Transcript inherits abstract class Feature and contains information of transcript.
Transcript(String, String, Exon) - Constructor for class edu.unc.csbio.data.Transcript
A constructor for Transcript object
transcriptPool - Static variable in class edu.unc.csbio.RNASim.MainCmdline
a TreeMap that maps a string to a transcript
transcripts - Variable in class edu.unc.csbio.data.Gene
An ArrayList of transcripts in the gene

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