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parse(String) - Static method in class edu.unc.csbio.util.GTFParser
This method returns a HashMap that contain the fields.
PerfectQualityGenerator - Class in edu.unc.csbio.RNASim
The class PerfectQualityGenerator extending QualityGenerator is for generating perfect quality score.
PerfectQualityGenerator() - Constructor for class edu.unc.csbio.RNASim.PerfectQualityGenerator
 
posOffset - Static variable in class edu.unc.csbio.util.VCFReader
 
print(String) - Method in class edu.unc.csbio.util.FqWriter
this method will append a given string to BufferedWriter out , without starting a new line
println(String) - Method in class edu.unc.csbio.util.FqWriter
this method will append a given string to BufferedWriter out , then start a new line
printRuntime() - Static method in class edu.unc.csbio.RNASim.MainCmdline
the method to print out the run time of the program
processBufferSize - Static variable in class edu.unc.csbio.RNASim.MainCmdline
buffer size for accumulating gene range

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