Uses of Class
edu.unc.csbio.data.SequenceBuffer

Packages that use SequenceBuffer
edu.unc.csbio.data   
edu.unc.csbio.RNASim   
 

Uses of SequenceBuffer in edu.unc.csbio.data
 

Subclasses of SequenceBuffer in edu.unc.csbio.data
 class ExtendedSequenceBuffer
          The class extending SequenceBuffer for handling structure variants in the sequence.
 

Methods in edu.unc.csbio.data with parameters of type SequenceBuffer
 java.lang.String Transcript.getSequence(SequenceBuffer motherSequence)
          The method to get a transcript sequence from a sequence buffer.
 java.lang.String Exon.getSequence(SequenceBuffer motherSequence)
          A method to get the sequence of an exon from a mother sequence (a sequence buffer).
 

Uses of SequenceBuffer in edu.unc.csbio.RNASim
 

Methods in edu.unc.csbio.RNASim with parameters of type SequenceBuffer
static void MainCmdline.GenerateSequenceForSingleGene(Gene g, SequenceBuffer buffer)
          given a gene, this method generates read and appends read information to output fq file