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Packages that use SequenceBuffer | |
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edu.unc.csbio.data | |
edu.unc.csbio.RNASim |
Uses of SequenceBuffer in edu.unc.csbio.data |
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Subclasses of SequenceBuffer in edu.unc.csbio.data | |
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class |
ExtendedSequenceBuffer
The class extending SequenceBuffer for handling structure
variants in the sequence. |
Methods in edu.unc.csbio.data with parameters of type SequenceBuffer | |
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java.lang.String |
Transcript.getSequence(SequenceBuffer motherSequence)
The method to get a transcript sequence from a sequence buffer. |
java.lang.String |
Exon.getSequence(SequenceBuffer motherSequence)
A method to get the sequence of an exon from a mother sequence (a sequence buffer). |
Uses of SequenceBuffer in edu.unc.csbio.RNASim |
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Methods in edu.unc.csbio.RNASim with parameters of type SequenceBuffer | |
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static void |
MainCmdline.GenerateSequenceForSingleGene(Gene g,
SequenceBuffer buffer)
given a gene, this method generates read and appends read information to output fq file |
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