Class Summary |
Config |
The class Config is for reading and processing configuration
file. |
MainCmdline |
The class MainCmdline is the main class |
PerfectQualityGenerator |
The class PerfectQualityGenerator extending
QualityGenerator is for generating perfect quality score. |
QualityGenerator |
The abstract class for all the quality score generator classes. |
QualityGeneratorFactory |
The factory that creates different quality score generator objects based on
configuration. |
ReadGenerator |
The class generates pair-end reads from a sequence. |
ReadModifier |
The class modifies pair-end reads from a sequence. |
RealQualityGenerator |
The class RealQualityGenerator extending
QualityGenerator is for generating quality score from real fq
files. |