REPT: an eQTL tool

This is the 64bit version on linux system.


[Usage] 
  ./test geno_fn pheno_fn #individuals #SNPs #phenotypes #permutations pvalue_threshold

[Options Details]
geno_fn: 	the genotype data file name (the rows are SNPs, the columns are individuals)
pheno_fn: 	the phenotype data file name
#individual: 	the number of individuals in the data
#SNPs: 		the number of SNPs in the data
#phenotypes:    the number of phenotypes in the data
#permutations:	the number of permutations used in the significant test
#pvalue_threshold: the threshold of pvalue that used to prune unsignificant SNPs.

  eg.
    ./test ./genotypes.txt ./phenotypes.txt 32 151924 100 100 0.01



Ver 0.1
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